McStas
-
versions 1.7, 1.8, 1.9, 1.9.1, 1.10, 1.11, 1.12, 1.12a, 1.12b,
1.12c, 2.0, 2.1, 2.2, 2.2a, 2.3, 2.4, 2.4.1, 2.5, 2.6, 2.6.1,
2.7,2.7.1, 2.7.2,3.0,3.1,3.2,3.3 and 3.4 of the neutron ray tracing package - developed for
Risø and later
DTU Physics
in
collaboration with NBI,
KU,
PSI
and
ILL
d3view - 3D visualisation package for brain images -
developed for Neurobiology Research
Unit. The 'Viden
om' TV show on science has had two features
about brain imaging and brain
surgery once available in REAL video format in which d3view is
used for visualisation. Also used for front cover illustrations in
Neuroimage
(1),
(2),
(3).
Simulation package for investigating parameter significance in
tomographic imaging - for my masters thesis
Selected Publications - Neutron Scattering
S. Samothrakitis, M.Bertelsen, P.K. Willendrup,
E.B. Knudsen, C.B. Larsen, N. Rizzi, L. Zanini, V. Santoro and
M. Strobl;
Neutron instrument concepts for a high intensity moderator at
the European spallation source;
Scientific Reports 2024 pp. 9360
https://doi.org/10.1038/s41598-024-59506-5
A.R. McCluskely, P. Aulin, F. Blomsten, M. Bertelsen,
C.M.C. Lobley, J. Lewis, M. Novelli, C. Somani, A. Stefanov, M
Trajanovski, N. Vaytet, P.K. Willendrup, JL Wynen, S Yoo,
T.H. Rod;
The First European Spallation Source Data Management and
Software Centre Summer School; Neutron News 2024 p. 1-3
https://doi.org/10.1080/10448632.2024.2331387
D.M. Rodríguez, P. Willendrup; W-T. Lee; A. Backs;
F.J. Villacorta, R. Toft-Petersen, M. Morgano;
Conceptual design of supermirror polarizers at the European
Spallation Source; EPJ Web Conf. 286 2023
https://doi.org/10.1051/epjconf/202328603008
W-T. Lee, J. Hagman, D.M. Rodríguez, A. Stellhorn,
A. Backs. T. Arnold, E. Blackburn, P. Deen, C. Durniak,
M. Feygenson, A.T. Holmes, J. Houston; S. Jaksch, O. Kirstein,
D. Mannix, M Månsson, M. Morgano, G. Nilsen, D. Noferini,
T. Nylander; D. Orlov, V. Santoro, S. Schmidt, M. Schulz,
W. Schweika, M. Strobl, A. Tartaglione, R. Toft-Petersen,
F.J. Villacorta, P. Willendrup, M. Wolff, R. Woracek;
Polarisation Development at the European Spallation Source; EPJ
Web Conf. 286 2023
https://doi.org/10.1051/epjconf/202328603004
M. Østergaard, E.B. Naver, A. Kaestner, P.K. Willendrup,
A. Brüel, H.O. Sørensen, J.S. Thomsen,S. Schmidt,
H.F. Poulsen, L.T.Kuhn, H. Birkedal; Polychromatic neutron
phase-contrast imaging of weakly absorbing samples enabled by
phase retrieval J. Appl. Cryst. (2023). 56 73-682
https://doi.org/10.1107/S1600576723003011
M. Jamalipour, L. Zanini, E.B. Klinkby, G. Gorini, P.K
Willendrup Improved beam extraction at compact neutron
sources using diamonds nanoparticles and supermirrors
Nuclear Inst. and Methods in Physics
Research, A – Volume 1033, pp. 166719
https://doi.org 10.1016/j.nima.2022.166719
W. G. Bouwman, E. B. Knudsen, L. Udby and P. Willendrup;
Simulations of foil-based spin-echo (modulated) small-angle
neutron scattering with a sample using
McStas J. Appl. Cryst. (2021). 54, 195-202
https://doi.org/10.1107/S1600576720015496
P. Willendrup and K. Lefmann;
McStas (ii): An overview of components, their use, and advice
for user contributions, Journal of Neutron Research, pre-press 2021
https://doi.org/10.3233/JNR-200186
P. Willendrup and K. Lefmann;
McStas (i): Introduction, use, and basic principles for
ray-tracing simulations DOI: Journal of Neutron Research,
vol. 22, no. 1, pp. 1-16, 2020
https://doi.org/10.3233/JNR-190108
T. Kittelmann, E. Klinkby, E.B. Knudsen, P. Willendrup, X.X. Cai, K. Kanakia;
Monte Carlo Particle Lists: MCPL, Computer Physics Communications, Volume 218, September 2017, Pages 17-42, ISSN 0010-4655,
https://doi.org/10.1016/j.cpc.2017.04.012
A. Cereser et. al. Time-of-Flight Three Dimensional Neutron
Diffraction in Transmission Mode for Mapping Crystal Grain
Structures, Scientific Reports 7, 2017, Article number: 9561
Schönfeldt T, Batkov K, Klinkby E.B., Lauritzen B., Mezei
F., Muhrer G., Pitcher E., Takibayev A., Willendrup P.K.,
Zanini L.; Broad spectrum moderators and advanced reflector
filters using Pb-208. Nuclear Inst. and Methods in Physics
Research, A – Volume 769, Issue 1, pp 1-4
Thomsena M., Knudsen E.B., Willendrup P.K., Bech M.,
Willner M., Pfeiffer F., Poulsen M., Lefmann K., Feidenhans’l
R.; Prediction of beam hardening artefacts in computed
tomography using Monte Carlo simulations. Nuclear Inst. and
Methods in Physics Research, B – Volume 342, Issue 1, pp 314-320
Farhi E.; Debab Y., Willendrup P.; iFit: A new data analysis framework. Applications for data reduction and optimization of neutron scattering instrument simulations with McStas. Journal of Neutron Research 17, 2014 pp. 5-18
Knudsen E.; Tranum-Rømer A.; Christiansen P.; Willendrup P.; Lefmann K.; Investigation of propagation algorithms for ray-tracing simulation of polarized neutrons. Journal of Neutron Research
17, 2014 pp. 27-34
Willendrup, P.; Farhi E.; Knudsen E.; Filges U.; Lefmann
K; McStas: past, present and future. Journal of Neutron Research
17, 2014 pp. 35-43
Farhi E.; Monzat C.; Arnerin R.; van Vuure T.; Castán-Guerrero
C.; Hennane C.;, Harraud P.A., G; Campioni M.; Fuard S.; Ollivier
J.; Willendrup P.; Journal of Neutron Research
17, 2014 pp. 63-74
Advanced sources and optical components for the McStas neutron scattering instrument simulation package.
Willendrup, P.K.; Cussen, L.D.; Numerical simulation study of
the performance of a small neutron three axis spectrometer In:
Nuclear Inst. and Methods in Physics Research, A – 2011, Volume 637,
Issue 1, pp. 109-118
Klenø Kaspar H; Willendrup, Peter K.; Knudsen, Erik; Lefmann, Kim; Eliminating line of sight in elliptic guides using gravitational curving In: Nuclear Inst. and Methods in Physics Research, A – 2011, Volume 634, Issue 1, pp. S100-S103
Udby, L.; Willendrup, P.K.; Knudsen, E.; Niedermayer, Ch.; Filges, U.; Christensen, N.B.; Farhi, E. ; Wells, .B.O. ; Lefmann, K.; Analyzing neutron scattering data using McStas virtual experiments In: Nuclear Inst. and Methods in Physics Research, A – 2011, Volume 634, Issue 1, pp. S138-S143
Willendrup, Peter K.; Udby, Linda; Knudsen, Erik; Farhi, Emmanuel; Lefmann, Kim; Using McStas for modelling complex optics, using simple building bricks In: Nuclear Inst. and Methods in Physics Research, A – 2011, Volume 634, Issue 1, pp. S150-S155
Knudsen E.; Udby L.; Willendrup P.;, Lefmann K.; Bouwman, W.G.; McStas-model of the delft SESANS Physica B-Cond Matt Volume 406 p 2361 (2011)
Prodi, A.; Knudsen, E.; Willendrup, P.; Schmidt, S.; Ferrero, C.; Feidenhans'l, R.; Lefmann, Kim; A Monte Carlo approach for simulating the propagation of partially coherent x-ray beams In: Proceedings of SPIE, the International Society for Optical Engineering – 2011, Volume 8141, Issue 1
Knudsen, E.; Prodi, A.; Willendrup, P.; Lefmann, K.; Baltser, J.; Gundlach, C.; Del Rio, M.S.; Ferrero, C.; Feidenhans'l, R.; McXtrace: A modern ray-tracing package for X-ray instrumentation In: Proceedings of SPIE, the International Society for Optical Engineering – 2011, Volume 8141, Issue 1
H Schober, E Farhi, F Mezei, P Allenspach, K Andersen, PM
Bentley, P Christiansen, B Cubitt, RK Heenan, J Kulda, P Langan, K
Lefmann, K Lieutenant, M Monkenbusch, P Willendrup, J Saroun, P
Tindemans, G Zsigmond: Tailored instrumentation for long-pulse neutron spallation sources, (Nuclear Instruments and Methods A., 589, (2008),
34-36.)
Geza Zsigmond, Sergey Manoshin, Klaus Lieutenant, Philip
A. Seeger, Peter Christiansen, Peter Willendrup,
Kim Lefmann: Monte Carlo simulations for the development of polarized neutron instrumentation: An overview, Physica B, 397, (2007),
115-119.)
Peter Willendrup, Uwe Filges, Lukas Keller, Emmanuel Farhi, Kim
Lefmann: Validation of a realistic powder sample using data
from DMC at PSI,
ICNS
2005
(Physica B, 386, (2006),
1032.)
Willendrup P. Farhi E. Lefmann K. McStas 1.7 - A New
Version of the Flexible Monte Carlo Neutron Scattering
Package. Appeared at ECNS 2003 and 24th Risø symposium
Andersen P. Lefmann K. Willendrup P. Farhi E.Monte Carlo
Simulations as part of the Instrument Configuration in Neutron
Scattering. Appeared at ECNS 2003
Popular article: Author: Willendrup, Peter
Kjær, Jørgensen, Mads Ry Vogel, Lefmann, Kim; Haldrup,
Kristoffer; Tre tigerspring for materialeforskningen In:
Aktuel Naturvidenskab 2015(1), p. 8-13
Popular article: Author: Lefmann, Kim; Arleth, Lise; Christensen, Niels Bech;
Pape Møller, Søren; Skelboe, Stig; Willendrup, Peter
Kjær; Supermikroskopet ESS -
DM fagligt
forum 2013
Popular article: Author: Lefmann, Kim; Arleth, Lise; Christensen, Niels Bech;
Pape Møller, Søren; Skelboe, Stig; Willendrup, Peter
Kjær; Under motorhjelmen på supermikroskopet ESS -
DM fagligt forum 2013
Popular article: Author: Lefmann, Kim; Arleth, Lise; Christensen, Niels Bech;
Pape Møller, Søren; Skelboe, Stig; Willendrup, Peter
Kjær; ESS: en forskningsfacilitet i verdensklasse under
opbygning i Lund In:
Kvant 2011(1), p. 25-32
Book: S. Peggs et al (more than 400 co-authors), ESS Technical Design Report, ISBN 978-91-980173-2-8, Lund (S), April 2013
Book(s):Willendrup P. Farhi E. Lefmann K. User and Programmers
Guide to the Neutron Ray-Tracing Package McStas, Version 1.12
(Risø-R-1416(rev.ed.)(EN), 978–87–550–3679–6) - and similar manuals for older releases
Book(s): Lefmann K. Willendrup P. Farhi E. Component Manual for the Neutron Ray-Tracing Package McStas, Version 1.12
(Risø-R-1538(rev.ed.)(EN), ISBN 978–87–550–3680–2) - and similar manuals for older releases
Selected Publications - Neuroscience
Willendrup P. Svarer C. Hanson LG. Paulson OB. A simple
approach to combined inhomogenity correction and tissue
segmentation of MR MPRAGE images. BrainPET'01. J Cereb Blood
Flow Metab 2001;21(suppl.1):S580
Svarer C. Willendrup P. Holm. S. Pinborg L. Hasselbalch
S. Paulson O.B. Knudsen G.M. The Impact of Partial Volume
Effects. EWCBR2002
Peter Willendrup, Lars H. Pinborg, Steen G. Hasselbalch, Karen
H. Adams, Karin Stahr, Gitte M. Knudsen, and Claus
Svarer. Assessment of the precision in co-registration of
structural MR-images and PET-images with localized binding, in International Congress Series
Volume 1265 , August 2004, Pages 275-280
Quantitation in Biomedical Imaging with PET and MRI. Proceedings of the International Workshop on Quantitation in Biomedical Imaging with PET and MRI, Elsevier, 2004
Willendrup P , Svarer C, Hasselbalch SG, Knudsen GM. Comparison of Coregistration Techniques for Neuroreceptor PET images. Society of Nuclear Medicine. Society of Nuclear Medicine, 2002.
Willendrup P , Svarer C, Hasselbalch SG, Knudsen GM. Precision of Coregistration Techniques for F18-Altanserin PET Images. Cunningham VJ, Myers R. The Fourth International Symposium on Functional Neuroreceptor Mapping of Living Brain. San Diego, CA, USA: NeuroImage, 2002: S85.